For subsequent craniotomies in mice, the skin is reopened and small (~1 mm) craniotomies are created using a drill, with locations determined by Pinpoint [43] and stereotaxic coordinates.
The researchers will acutely insert up to six Neuropixels 1.0 probes in mice on the day of recording, using Pinpoint software to guide the locations.
Mice advance to the main training stage once they lick for at least 75% of trials in a session.
Prior to surgical procedures in mice, researchers administer subcutaneous injections of sustained-release buprenorphine (1 mg/kg) for analgesia, dexamethasone (0.2 mg/kg) for swelling reduction, and bupivacaine (2 mg/kg) for local anesthesia.
The researchers will manipulate prefrontal cortex activity on a trial-to-trial basis using electrical stimulation in non-human primates and optogenetic silencing in mice.
To test the predictions of Integrated Information Theory (IIT), researchers will apply pairwise phase consistency analyses to neurons and LFPs significantly activated in response to stimuli in the window between 250 ms post-stimulus onset to stimulus offset for non-human primates (NHPs) and between 150 ms post-stimulus onset to stimulus offset for mice, compared to a baseline of 0–250 ms pre-stimulus onset.
The mouse experiments will use adult male and female Mus musculus from the C57BL/6 (Stock No. 000664), Vgat-ires-Cre (Slc32a1; Stock No. 028862), or Ai32 × Vgat-ires-Cre (Stock Nos. 024109, 028862) lines, aged 60–250 days and weighing 18–30g.
Mice are required to withhold licking in response to non-target and irrelevant stimuli, and incorrect responses to these stimuli are not punished.
The custom-built implant for mice contains holes centered at specific bregma coordinates for recording sites: ORB (AP + 2.35, ML −1.05), ACA (+ 1.1, −0.8), PTLp (−2.25, −1.8), AUD (−2.7, −4.05), and VIS (−3.6, −2.3).
The researchers will target brain areas in mice using stereotaxic coordinates and manipulator angles, verified by sensory response properties and/or reconstruction of probe trajectories using DiI or DiO coating with ex vivo brain imaging or post-hoc histology.
When decoding content-specific sensory regions, the researchers use recording data from the sensory region associated with the sensory content in the relevant trial, such as pITC (including PL), mITC (including ML) for faces in NHPs, and VISp for visual gratings in mice.
van Daal RJJ et al. published a protocol in Nature Protocols in 2021 for the implantation of Neuropixels probes to perform chronic recording of neuronal activity in freely behaving mice and rats.
Mice advance to the full behavioral task once they achieve a d-prime of 2 for two out of three consecutive days during the main training stage.
To enable cross-species comparisons, the study protocol involves non-human primates (NHPs) and mice viewing or listening to supra-threshold visual or auditory stimuli for variable durations in a go-nogo task that controls for report confounds, while recording neuronal responses from visual, auditory, posterior parietal, and/or prefrontal cortical areas using Neuropixels electrodes.
The researchers will perform control trials in mice using manipulation outside the sensory stimulation epoch and using wild-type mice that do not express channelrhodopsin; for non-human primates, control trials will involve electrical stimulation during central fixation only.
The specific brain areas targeted for recording are areas 45, 46, pITC, mITC, and 7a in NHPs, and ACA, ORB, VISp, AUDp, and PTLp in mice.
To silence cortical activity in mice, researchers will inject a virus carrying the Cre-dependent red-shifted opsin ChrimsonR (or a similar red-shifted excitatory opsin) into the anterior cingulate area (ACA) and orbitofrontal cortex (ORB) regions of a pan-inhibitory reporter line (Slc32a1-Cre, also known as Vgat-ires-Cre).
Mice report target stimuli by licking a water spout within a response window of 0.1 to 1 second following stimulus onset, which is rewarded with water.
Kissinger et al. (2024) identified distinctive neurophysiological signatures of analgesia after inflammatory pain in the anterior cingulate cortex (ACC) of freely moving mice.
Non-human primates and mice perform a go-nogo behavioral task in which they must discriminate target stimuli from non-target relevant stimuli and from task-irrelevant stimuli.
To causally test predictions about the timing and location of the neural correlates of consciousness, the study protocol involves manipulating activity in prefrontal cortical regions using electrical stimulation in non-human primates or optogenetic silencing in mice.
To test the predictions of Global Neuronal Workspace Theory (GNWT), researchers will apply pairwise phase consistency analyses between significantly responsive neurons/LFPs (in the window 250–500 ms post-stimulus onset for NHPs and 150–400 ms post-stimulus onset in mice, compared to the baseline 0–250 ms pre-stimulus onset) and all other LFPs/neurons located in putative GNWT brain areas, based on the theory's prediction that early local sensory response is broadcast during ignition into the global workspace.
Mice training to lick from a water spout proceeds by first providing manually-dispensed water rewards freely, and then providing rewards only when the mouse licks.
To test functional connectivity predictions, the researchers will calculate spike-LFP pairwise phase consistency for each area pair, comparing consistency at pre-stimulus onset (0–250 ms) with consistency during the stimulus onset window (250–500 ms post-stimulus onset for non-human primates; 150–400 ms post-stimulus onset for mice) and the stimulus duration window.
Neuropixels probes are used to record spiking activity and LFPs simultaneously from two PFC areas, two sensory areas, and one parietal area in NHPs and mice during behavioral tasks.
Euthanasia for mice is performed by infusion of ketamine (300 mg/kg) and dexmedetomidine (3 mg/kg) or prolonged exposure to CO2, consistent with American Veterinary Medical Association (AVMA) Guidelines on Euthanasia.
Mice receive a subcutaneous injection of the antibiotic enrofloxacin (Baytril; 5 mg/kg) for 3 days as part of their post-operative care.
For the WHC (Wide-field Head-stage Chamber) surgery in mice, the head is leveled, an outline of the WHC is made on the left hemisphere using Dumont #5/45 Forceps, and a custom-built headframe is adhered to the skull using dental acrylic.
The study enforces a sample size limitation of 15 recording sessions in each non-human primate (NHP) and, for mice, 4 recordings per area per mouse, with a maximum of 20 mice.
The feasibility of simultaneous recordings with Neuropixels probes has been demonstrated in both mice and NHPs.
Surgical procedures for mice involve either a whole-hemisphere craniotomy (WHC) that replaces the skull and dura mater with a custom-built implant, or small craniotomies over target locations.
Surgical procedures for brain recording access involve a head post surgery for head stabilization and a craniotomy for probe insertion, performed under general anesthesia using either isoflurane gas (1–3% isoflurane/O2) for mice and NHPs, or constant rate infusion of propofol (0.1–0.6 mg/kg/min, IV) for NHPs only.
Gale SD et al. demonstrated that backward masking in mice requires the visual cortex, as published in Nature Neuroscience in 2024.
The study protocol requires at least nine recording sessions from each of the two macaques and nine recording sessions from each region of interest in the mice subjects.
The authors of the study are extending the Cogitate framework to rhesus macaques (Macaca mulatta) and mice (Mus musculus) to allow for direct access to individual neuron activity via intracranial electrophysiology and causal manipulation of brain activity using electrical stimulation and optogenetics.
The surgical preparation for mice in the study involves removing hair from the scalp and cleansing it with 10% povidone-iodine solution (Betadine, U.S.A.) and 70% ethanol.
The researchers test predictions in both macaques and mice because macaques have a neuroanatomical organization more similar to humans and allow for complex behavioral paradigms, while mice allow for advanced viral and genetic techniques for causal manipulations.
For small craniotomy head post surgery in mice, a metal head post is adhered to the skull using dental acrylic, and the scalp skin is closed using vetbond.
In the full behavioral task for mice, task-irrelevant stimuli are introduced, stimulus durations vary between 0.5 and 1.5 seconds, and incorrect responses to non-target or irrelevant stimuli are not punished.
The main training procedure for mice includes initial autorewarded targets, pseudorandom stimulus presentation, and specific criteria for reward and punishment, with the following modifications: if a mouse fails to respond to the target after ten consecutive trials, an autoreward is dispensed on the 11th presentation; incorrect responses to non-target stimuli are punished with a 3-second timeout and an error cue (black screen for visual target mice, white noise for auditory target mice); all stimulus durations are 0.5 seconds; and task-irrelevant stimuli are excluded.
Mice habituation involves handling the animals for five minutes each day for five days, followed by water restriction to 85% of their baseline weight.
The SVM classifier successfully decoded stimulus identity in a visual-relevant group of 3 mice and an auditory-relevant group of 4 mice.
Mice must maintain a d-prime of 2 for two days on the full behavioral task before undergoing the electrophysiology experiment.
The researchers will manipulate prefrontal cortex (PFC) activity from 0–0.5 seconds after stimulus onset in non-human primates and mice for irrelevant stimuli, using a single stimulus duration of 0.5 seconds.
The researchers will insert probes into the right hemisphere of non-human primates due to a potential right-hemispheric bias for face processing, while probes in mice will be inserted into the left hemisphere to utilize existing surgical and electrophysiological infrastructure.
The custom-built implant for mice is secured to the skull edges using Loctite 4305 and dental acrylic, and the recording holes are covered by a removable protective silicon layer during behavioral training.
Mice are trained to lick when shown a target stimulus by presenting 150 randomly-interleaved target and non-target stimuli, with free water rewards provided alongside the target stimulus and the introduction of a quiescent period.
For mouse subjects, the researchers include only trials where the mice demonstrate active task engagement, defined as at least an 80% response rate to target trials in the two minutes preceding and following the trial.
During WHC surgery in mice, the skull is drilled along the WHC outline, removed, and the dura mater is removed using a Bonn Micro Probe and McPherson-Vannas Scissors.